Publications

 

Please view the most updated list on ORCID or ResearcherID

Fleur Kleinpenning, Selma Eising, Tim Berkenbosch, Judith M. Schaart, Kimberly M. Bonger*. Subcellular protein labeling by a spatially-restricted arylamine N-acetyltransferase. 2018, Manuscript submitted

Selma Eising, Fleur Kleinpenning, Jurriaan J. A. Heming, Kimberly M. Bonger*. Orthogonal Bioorthogonal Tetrazine Ligations with Vinylboronic Acid and a Strained Alkene. 2018, Manuscript submitted

Anouk van der Gracht, Mark de Geus, Marcel Camps, Tracy Ruckwardt, Jessica Bremmers, Elmer Maurits, Joanna Pawlak, Michelle Posthoorn, Kimberly M. Bonger, Dmitri Filippov, Herman S. Overkleeft, Marc Robillard, Ferry Ossendorp, Sander van Kasteren. Trans-cyclooctene-modified Epitopes Allow Chemical Control over T-Cell Activation In Vivo. ACS Chem. Biol. 2018, Accepted manuscript.

Lise Schoonena,# Selma Eising,# Mark B. van Eldijk, Jaleesa Bresseleers, Margo van der Pijl, Roeland J. M. Nolte, Kimberly M. Bonger*, Jan C. M. van Hest*. Modular, bioorthogonal strategy for the controlled loading of car-go into a protein nanocage. Bioconjug. Chem. 2018, 29, 1186. Link

Selma Eising, Nicole G. A. van der Linden, Fleur Kleinpenning, Kimberly M. Bonger*. Vinylboronic Acids as Efficient Bioorthogonal Reactants for Tetrazine Labeling in Living Cells. Bioconjug. Chem. 2018, 29, 982. Link

Jessie A. van Buggenum, Jan P. Gerlach, Selma Eising, Kimberly M. Bonger*, Klaas W. Mulder*. Production and application of chemically cleavable antibody-DNA conjugates in quantitative immuno-PCR experiments. Meth. Mol. Biol. Accepted manuscript.

Selma Eising, Francis Lelivelt, Kimberly M. Bonger*. Vinylboronic Acids as Fast Reacting, Synthetically Accessible, and Stable Bioorthogonal Reactants in the Carboni–Lindsey Reaction. Angew. Chem. Int. Ed. 2016, 55, 12243. Link

Jessie A. van Buggenum, Jan P. Gerlach, Selma Eising, Lise Schoonen, Roderick A.P.M. Eijl, Sabine E.J. Tanis, Mark Hogeweg, Nina C. Hubner, Jan C. van Hest, Kimberly M. Bonger, Klaas W. Mulder. Direct and reversible antibody-DNA conjugates for sensitive, multiplexed protein detection in cells. Sci. Rep. 2016, 6, 22675. Link

Richard J.B.H.N. van den Berg, Erwin R. van Rijssel, Anneke Strijland, Wilma E. Donker-Koopman, Tom Wennekes, Kimberly M. Bonger, Amar T. Ghisaidoobe, Sascha Hoogendoorn, Gijsbert A. van der Marel, Jeroen D. C. Codée, Herman S. Overkleeft and Johannes M. F. G. Aerts. Synthesis and evaluation of hybrid structures composed of two glucosylceramide synthase inhibitors. ChemMedChem 2015, 10, 2042-2062. Link

Sean R. Collins, Hee W. Yang, Kimberly M. Bonger, Emmanuel G. Guignet, Thomas J. Wandless and Tobias Meyer.  Using light to shape chemical gradients for parallel and automated analysis of chemotaxis. Mol. Sys. Biol. 2015, 4, 804. Link

Sanne M.M. Hensen, Wilbert C. Boelens, Kimberly M. Bonger, Remco T.P. van Cruchten, Floris L. van Delft and Ger J.M. Pruijn. Phenylglyoxal-Based Visualization of Citrullinated Proteins on Western Blots. Molecules 2015, 20, 6592-6600. Link

Kimberly M. Bonger*, Rishi Rakhit, Alexander Y. Payumo, James K. Chen, Thomas J. Wandless*. A general method for regulating protein stability by light. ACS Chem. Biol. 2014, 9, 111-115. Link
Highlighted in Chemical & Engineering News, November 14th 2013. Link

Tom Wennekes#, Kimberly M. Bonger#, Katrin Vogel, Richard J.B.H.N. van den Berg, Anneke Strijland, Wilma E. Donker-Koopman, Johannes M.F.G. Aerts, Gijsbert A. van der Marel, Herman S. Overkleeft. The Development of an Aza-C-Glycoside Library Based on a Tandem Staudinger/Aza-Wittig/Ugi Three-Component Reaction. Eur. J. Org. Chem. 2012, 32, 6420-6454. Link

Kimberly M. Bonger, Ling-chun Chen, Corey W. Liu and Thomas J. Wandless. Small-molecule displacement of a cryptic degron causes conditional protein degradation. Nat. Chem. Biol. 2011, 7, 531-537. Link
Highlighted in Nature Methods 2011, 8, 711. Link

Kimberly M. Bonger#, Sascha Hoogendoorn#, Chris J. van Koppen, C. Marco Timmers, Gijsbert A. van der Marel  and Herman S. Overkleeft. Development of selective luteinizing hormone receptor agonists by heterodimerization with follicle-stimulating hormone antagonist. ACS Med. Chem. Let. 2011, 2, 85-89. Link

Kimberly M. Bonger,  Varsha V. Kapoerchan, Gijsbert M. Grotenbreg, Chris J. van Koppen, C. Marco Timmers, Gijsbert A van der Marel, Herman S. Overkleeft. Oligoproline helices as structurally defined scaffolds for oligomeric G protein-coupled receptor ligands. Org. Biomol. Chem. 2010, 8, 1881-1884. Link

Kimberly M. Bonger#, Sascha Hoogendoorn#, Chris J. van Koppen, Cornelis M. Timmers, Herman S. Overkleeft. Gijsbert A. van der Marel. Synthesis and Pharmacological Evaluation of Dimeric Follicle-Stimulating Hormone Receptor Antagonists. ChemMedChem 2009, 4, 2098-2102. Link

Kimberly M. Bonger, Richard J. B. H. N. van den Berg, Annemiek D. Knijnenburg, Laura H. Heitman, Chris J. van Koppen, Cornelis M. Timmers, Herman S. Overkleeft, Gijsbert A. van der Marel. Discovery of Selective Luteinizing Hormone Receptor Agonists Using the Bivalent Ligand Method. ChemMedChem2009, 4, 1189-1195. Link

Tom Wennekes, Richard J. B. H. N. van den Berg, Kimberly M. Bonger, Wilma E. Donker-Koopman, Amar Ghisaidoobe, Gijsbert A. van der Marel, Anneke Strijland, Johannes M. F. G. Aerts, Herman S. Overkleeft, Synthesis and evaluation of dimeric lipophilic iminosugars as inhibitors of glucosylceramide metabolism. Tetrahedron Asym. 2009, 20, 836-846. Link

Kimberly M. Bonger#, Tom Wennekes#, Gerrit Lodder, Dmitri Filippov, Gijs A. van der Marel and Herman S. Overkleeft. The effect of Lewis Acids on the stereochemical outcome of L-Lyxo Pyrroline with the tandem Staudinger aza-Wittig Ugi 3CR. Eur. J. Org. Chem. 2008, 21, 3678-3688. Link

Kimberly M. Bonger#, Richard J. B. H. N. van den Berg#, Laura H. Heitman, Ad P. IJzerman, Julia Oosterom, Cornelis M. Timmers, Herman S. Overkleeft, Gijsbert A. van der Marel. Synthesis and evaluation of homobivalent GnRHR ligands having a rigid benzene core. Bioorg. Med. Chem. 2008, 16, 3744-3758. Link

Laura H. Heitman, Julia Oosterom, Kimberly M. Bonger, Cornelis M. Timmers, Peter H.G. Wiegerinck and Adriaan P. IJzerman. [3H]Org 43553, the First Low-Molecular-Weight Agonistic and Allosteric Radioligand for the Human Luteinizing Hormone Receptor. Mol. Pharmacol. 2008, 73, 518-524. Link

Kimberly M. Bonger#, Richard J. B. H. N. van den Berg#, Laura H. Heitman, Ad P. IJzerman, Julia Oosterom, Cornelis M. Timmers, Herman S. Overkleeft, Gijsbert A. van der Marel. Synthesis and evaluation of homobivalent GnRHR ligands. Bioorg. Med. Chem. 2007, 15, 4841-4856. Link

Kimberly M. Bonger#, Tom Wennekes#, Sebastiaan V. P. de Lavoir, Davide Esposito, Richard J. B. H. N. van den Berg, Remy E. J. N. Litjens, Gijs A. van der Marel and Herman S. Overkleeft. Transformation of Carbohydrate Derived 4-Azidopentanals Into Highly Functionalized pyrrolidines Via a Tandem Staudinger/aza-Wittig/Ugi Multicomponent Reaction. QSAR Comb. Sci. 2006, 25, 491-503. Link